Course: Chemistry of Nucleic Acids

» List of faculties » PRF » OCH
Course title Chemistry of Nucleic Acids
Course code OCH/CNA
Organizational form of instruction Lecture
Level of course Master
Year of study not specified
Semester Winter and summer
Number of ECTS credits 3
Language of instruction English
Status of course Compulsory-optional
Form of instruction Face-to-face
Work placements This is not an internship
Recommended optional programme components None
Course availability The course is available to visiting students
Lecturer(s)
  • Urban Milan, prof. RNDr. Ph.D.
Course content
Syllabus: 1. Introduction to the world of DNA and RNA. Historical overview of the main discoveries. Evolution. 2. Structure of DNA and RNA, nucleosides, nucleotides, physical and chemical properties. Primary and secondary structure of nucleic acids, occurrence and function in living organisms. 3. Nucleosides and nucleotides - chemical synthesis, chemistry of esters and anhydrides of phosphorus oxoacids. 4. Biosynthesis and metabolism of nucleosides, nucleotides and nucleic acids. 5. Synthesis of oligonucleotides in solution phase, on solid phase, biosynthesis of nucleic acids. Difference in approach in synthesis of DNA and RNA. 6. Modified nucleobases, modified backbone and modified sugar. Properties and preparation 7. Nucleic acids in biotechnology. PCR, DNA sequence determination, gene cloning, gene synthesis, detection of specific sequences by hybridization. 8. Genes and genome, gene structure, gene families, chromosomes, copying DNA (replication, transcription), mutations, genome repair, DNA recombination. 9. RNA structure and function, typical structural motifs, RNA processing and modification, translation, RNA involved in transport, RNA structure and function in viral systems. 10. Covalent interactions of nucleic acids and small molecules and repair of DNA lesions. 11. Protein-nucleic acids interactions. Features of nucleic acids recognized by proteins, representative recognition motifs, physical aspects of binding proteins to DNA, polymerases. 12. Physical and structural techniques applied to nucleic acids. Spectroscopic methods.

Learning activities and teaching methods
Lecture
Learning outcomes
The class is oriented on nucleosides, nucleotides and nucleic acids, their biological and chemical properties, synthesis and use.

Prerequisites
Interview in English language (general topic - should only reveal the communication skills in English).

Assessment methods and criteria
Oral exam, Written exam

Successfully passing of a written exam (> 60 % of points) and success at an oral exam.
Recommended literature
  • Blackburn, G.M. et al. Nucleic Acids in Chemistry and Biology.
  • Blackburn, M. G., Gait, M. J., Loakes, D., Williams, D. M. (2006). Nucleic Acids in Chemistry and Biology. 3rd Ed.. Oxford: Oxford University Press.
  • Lehninger. Principles of Biochemistry, W. H. Freeman and Co., NY, USA..


Study plans that include the course
Faculty Study plan (Version) Category of Branch/Specialization Recommended year of study Recommended semester
Faculty: Faculty of Science Study plan (Version): Bioorganic Chemistry and Chemical Biology (2020) Category: Chemistry courses 1 Recommended year of study:1, Recommended semester: Winter
Faculty: Faculty of Science Study plan (Version): Organic Chemistry (2021) Category: Chemistry courses 1 Recommended year of study:1, Recommended semester: Winter