Course: Chemical Biology 2

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Course title Chemical Biology 2
Course code OCH/CB2
Organizational form of instruction Lecture
Level of course Master
Year of study not specified
Semester Winter
Number of ECTS credits 4
Language of instruction Czech
Status of course Compulsory
Form of instruction Face-to-face
Work placements This is not an internship
Recommended optional programme components None
Lecturer(s)
  • Urban Milan, prof. RNDr. Ph.D.
  • Nencka Radim, Mgr. Ph.D.
Course content
1. Rational and combinatorial approach in drug development, chemical synthesis libraries. 2. Rational design of inhibitors of protein - protein interactions 3. Rational drug design to overcome drug resistance 4. Biomimetics 5. Chemical synthesis of peptides and peptide libraries and their testing. 6. Molecular modeling, prediction of the interaction of small molecules and proteins. 7. Software tool for analysis of cellular pathways, data types and formats of expression profiling. 8. Data visualisation chemical biology, SAR analysis and interpretation 9. Chemical genetics / SCIBS, genomics, methods, and applications, nucleic acids and their interaction with small molecules. 10. Protein expression , rational design of proteins, phage display. 11. Proteomics, proteomic methods in search of targets of small molecules, DARTS, SILAC, immunoaffinity purification. 12. PCR, RT-PCR validation of targets, mutagenesis, zinc-finger nucleases, microarrays and their use in chemical biology

Learning activities and teaching methods
Lecture
Learning outcomes
Student will be introduced to the applications of chemical biology in drug development

Prerequisites
unspecified

Assessment methods and criteria
Oral exam

Knowledge of the subject matter (syllabus) and recommended literature.
Recommended literature
  • Herbert Waldman, Petra Janning, Wiley-VCH. Chemical Biology (A practical course).
  • Herbert Waldman, Petra Janning, Wiley-VCH. Chemical Biology (Learning through case studies).


Study plans that include the course
Faculty Study plan (Version) Category of Branch/Specialization Recommended year of study Recommended semester
Faculty: Faculty of Science Study plan (Version): Bioorganic Chemistry and Chemical Biology (2020) Category: Chemistry courses 2 Recommended year of study:2, Recommended semester: Winter