Course: Recombinant GFP Technologies and their use

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Course title Recombinant GFP Technologies and their use
Course code KBI/GFPTA
Organizational form of instruction Lecture + Seminar
Level of course Master
Year of study not specified
Semester Summer
Number of ECTS credits 4
Language of instruction Czech
Status of course Compulsory
Form of instruction Face-to-face
Work placements This is not an internship
Recommended optional programme components None
Lecturer(s)
  • Luptovčiak Ivan, Mgr. Ph.D.
Course content
1. History. The discovery of fluorescent proteins, their natural sources and biological functions. Principles of bioluminescence. 2. Physical, chemical and molecular properties of fluorescent proteins. The three-dimensional structure and variations in the structure as a basis for functional variability. 3. The green fluorescent protein from Aequorea victoria (GFP) and its mutant allelic forms. Changes in the spectral properties, phototoxicity and photostability. Types and properties of naturally occurring fluorescent proteins from other species. 4. Spectral properties of fluorescent proteins and their use in cell biology. Fluorochrome maturation and expression of the excitation and emission properties. Dimerization and oligomerization, targeted development of the monomeric forms. 5. Molecular biology of recombinant GFP technology. Cloning vectors, the construction of plasmids for gene transfer. Formation of fluorescent protein fusion products. Methods of propagation, isolation and transformation. The sequences of the chimeric genes. 6. Passive application of GFP technology. Functional GFP fusion and recombinant expression. Cell markers, reporter genes, fusion proteins. 7. Spectrum of GFP technology utilization in different species of organisms. Applications in functional cell studies. 8. Specific fluorescent tagging of proteins to study dynamic cellular organelles. Monitoring of dynamic organelles and GFP-fusion proteins, the subcellular localization, multicolour imaging and colocalization. 9. Utilization of fluorescent proteins in plants: the preparation of constructs, transformation, expression, detection. Variants of fluorescent proteins for multispectral detection in living cells. Expression of nontoxic markers by non-invasive method in real time. 10. Practical applications of the study of living cells in real time: Quantitative analysis of proteins, their interactions and dynamic redistribution in cells by FRET, FLIM, FRAP, FLIP. Visualization of molecular interactions in living cells by bimolecular fluorescence complementation. Principle, possible uses and applications. Fluorescence correlation spectroscopy. 11. Optical variants of fluorescent proteins and their applications. Photoactivation, photoconversion, photoinduction, time-spectral activation. 12. Genetically encoded fluorescent molecular biosensors: Active applications of GFP technologies for sensitive detection of physiological and metabolic cellular changes.

Learning activities and teaching methods
unspecified
Learning outcomes
A comprehensive theoretical basis for understanding what meant the introduction of recombinant GFP technology in scientific practice for current experimental biology.
Theoretical knowledge of the principles of modern recombinant GFP technologies, their use and practical applications in plant biology.
Prerequisites
unspecified

Assessment methods and criteria
unspecified
Active participation and preparation of the seminar work (constitutes 30% of the final grade) and successful completion of the written exam in the form of a test (70% of the final grade) with a minimum score of 75% for successful completion of the course
Recommended literature
  • Berg RH, Beachy RN. (2008). Fluorescent protein applications in plants. Methods Cell Biol 85: 153-77.
  • Chudakov DM, Matz MV, Lukyanov S, Lukyanov KA. (2010). Fluorescent proteins and their applications in imaging living cells and tissues. Physiol Rev 90: 1103?1163 .
  • Sullivan KF . (2008). Fluorescent Proteins. Methods in Cell Biology ? Svazek 85, Academic Press.
  • Tsien RY. (1998). The green fluorescent protein. Annu Rev Biochem 67: 509?44.


Study plans that include the course
Faculty Study plan (Version) Category of Branch/Specialization Recommended year of study Recommended semester
Faculty: Faculty of Science Study plan (Version): Biotechnology and Genetic Engineering (2019) Category: Chemistry courses 1 Recommended year of study:1, Recommended semester: Summer